FP receptor - Gq

GPCR CLASS (FAMILY)

Class A (Rhodopsin)

GPCR SPECIES

Homo sapiens

GPCR PREFERRED CHAIN

R

G PROTEIN (FAMILY)

Gq/11

G PROTEIN SPECIES

Homo sapiens

PDB CODE

8IUL

RESOLUTION

2.8 Å

REFERENCE

10.1038/S41467-023-38411-X

PUBLICATION DATE

July 12, 2023

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.

LIGAND INTERACTIONS

62 interactions (Click to see)

LIGANDS

latanoprost (free acid form) - Agonist pubchem gtoplig chembl_ligand

ENDOGENOUS LIGANDS

PGE2, PGF2α, thromboxane A2, PGI2, PGD2



GPCR - G protein interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (Gα residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction cut-off:

Residue numbering:

GPCR-G protein backbone (bb) or sidechain (sc):





Structures

Sequence Color

Gα, Gβ, Gγ, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Gα
segment
AA
Number		 Generic
number
Hydrophobic TM1 F 58 1x64 G.H5 R 356 G.H5.21
Van-der-waals TM1 F 58 1x64 G.H5 R 356 G.H5.21
Hydrophobic TM3 V 137 3x54 G.H5 Y 358 G.H5.23
Van-der-waals TM4 K 150 4x40 G.HN Q 28 G.HN.52
Hydrophobic ICL2 P 140 34x50 G.H5 K 347 G.H5.12
Hydrophobic TM1 A 54 1x60 G.H5 L 360 G.H5.25
Polar TM3 G 136 3x53 G.H5 N 354 G.H5.19
Van-der-waals TM3 G 136 3x53 G.H5 N 354 G.H5.19
Hydrophobic TM1 F 58 1x64 G.H5 E 357 G.H5.22
Hydrophobic TM6 M 247 6x33 G.H5 L 355 G.H5.20
Hydrophobic TM6 M 247 6x33 G.H5 Y 358 G.H5.23
Van-der-waals TM6 M 247 6x33 G.H5 Y 358 G.H5.23
Hydrophobic H8 A 310 8x49 G.H5 L 360 G.H5.25
Hydrophobic ICL2 I 141 34x51 G.S3 V 194 G.S3.01
Hydrophobic ICL2 P 140 34x50 G.H5 L 351 G.H5.16
Hydrophobic TM1 F 58 1x64 G.H5 L 360 G.H5.25
Hydrophobic TM2 L 67 2x40 G.H5 L 360 G.H5.25
Hydrophobic ICL2 T 145 34x55 G.S1 L 34 G.S1.02
Polar TM6 H 243 6x29 G.H5 N 359 G.H5.24
Hydrophobic TM5 L 227 5x63 G.H5 L 355 G.H5.20
Hydrophobic ICL2 I 141 34x51 G.H5 I 350 G.H5.15
Hydrophobic H8 R 308 8x47 G.H5 N 359 G.H5.24
Polar TM6 H 244 6x30 G.H5 Q 352 G.H5.17
Hydrophobic TM6 H 244 6x30 G.H5 Q 352 G.H5.17
Van-der-waals TM6 H 244 6x30 G.H5 Q 352 G.H5.17
Hydrophobic TM2 F 66 2x39 G.H5 L 360 G.H5.25
Polar TM2 A 64 2x37 G.H5 E 357 G.H5.22
Hydrophobic TM2 A 64 2x37 G.H5 E 357 G.H5.22
Van-der-waals TM2 A 64 2x37 G.H5 E 357 G.H5.22
Aromatic TM2 F 66 2x39 G.H5 Y 358 G.H5.23
Hydrophobic TM2 F 66 2x39 G.H5 Y 358 G.H5.23
Van-der-waals TM2 F 66 2x39 G.H5 Y 358 G.H5.23
Hydrophobic TM1 F 58 1x64 G.H5 V 361 G.H5.26
Van-der-waals TM1 F 58 1x64 G.H5 V 361 G.H5.26
Hydrophobic ICL2 S 144 34x54 G.H5 I 350 G.H5.15
Aromatic TM3 R 133 3x50 G.H5 Y 358 G.H5.23
Hydrophobic TM3 R 133 3x50 G.H5 Y 358 G.H5.23
Polar ICL1 K 61 - G.h3s5 T 251 G.h3s5.02
Van-der-waals ICL1 K 61 - G.h3s5 T 251 G.h3s5.02
Hydrophobic TM7 I 305 7x54 G.H5 L 360 G.H5.25
Van-der-waals TM7 I 305 7x54 G.H5 L 360 G.H5.25
Hydrophobic ICL2 I 141 34x51 G.H5 F 343 G.H5.08
Polar ICL3 G 240 - G.H5 Q 352 G.H5.17
Hydrophobic ICL2 P 140 34x50 G.H5 I 350 G.H5.15
Van-der-waals ICL2 P 140 34x50 G.H5 I 350 G.H5.15
Hydrophobic ICL2 I 141 34x51 G.H5 K 347 G.H5.12
Hydrophobic TM6 H 243 6x29 G.H5 V 361 G.H5.26
Van-der-waals TM6 H 243 6x29 G.H5 V 361 G.H5.26
Hydrophobic ICL2 T 145 34x55 G.hns1 R 32 G.hns1.03
Van-der-waals ICL2 T 145 34x55 G.hns1 R 32 G.hns1.03
Hydrophobic ICL3 H 237 - G.H4 V 313 G.H4.16
Van-der-waals ICL3 H 237 - G.H4 V 313 G.H4.16
Hydrophobic H8 V 311 8x50 G.H5 L 360 G.H5.25
Hydrophobic ICL1 S 62 - G.H5 M 353 G.H5.18
Hydrophobic TM3 V 137 3x54 G.H5 L 351 G.H5.16
Van-der-waals TM3 V 137 3x54 G.H5 L 351 G.H5.16
Hydrophobic TM3 V 137 3x54 G.H5 L 355 G.H5.20
Hydrophobic TM6 M 247 6x33 G.H5 N 359 G.H5.24
Van-der-waals TM6 M 247 6x33 G.H5 N 359 G.H5.24
Hydrophobic H8 R 308 8x47 G.H5 L 360 G.H5.25
Hydrophobic TM1 L 51 1x57 G.H5 L 360 G.H5.25
Hydrophobic ICL1 K 63 - G.hns1 R 31 G.hns1.02
Polar TM2 F 66 2x39 G.H5 E 357 G.H5.22
Hydrophobic TM2 F 66 2x39 G.H5 E 357 G.H5.22
Van-der-waals TM2 F 66 2x39 G.H5 E 357 G.H5.22
Hydrophobic TM6 H 243 6x29 G.H5 L 355 G.H5.20
Hydrophobic H8 A 310 8x49 G.H5 V 361 G.H5.26
Hydrophobic TM6 H 244 6x30 G.H5 L 355 G.H5.20
Van-der-waals TM6 H 244 6x30 G.H5 L 355 G.H5.20
Polar TM2 S 65 2x38 G.H5 E 357 G.H5.22
Van-der-waals TM2 S 65 2x38 G.H5 E 357 G.H5.22
Hydrophobic TM6 H 243 6x29 G.H5 R 356 G.H5.21
Hydrophobic TM1 I 50 1x56 G.H5 L 360 G.H5.25
Polar TM6 E 246 6x32 G.H5 N 359 G.H5.24
Hydrophobic TM6 E 246 6x32 G.H5 N 359 G.H5.24
Van-der-waals TM6 E 246 6x32 G.H5 N 359 G.H5.24
Hydrophobic TM2 L 67 2x40 G.H5 E 357 G.H5.22
Polar ICL1 S 62 - G.H5 E 357 G.H5.22
Van-der-waals ICL1 S 62 - G.H5 E 357 G.H5.22