Structure information

β1-adrenoceptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

8DCR

SPECIES

Meleagris gallopavo

RESOLUTION

2.600

PREFERRED CHAIN

R

REFERENCE

10.1038/S41467-022-31823-1

PUBLICATION DATE

July 27, 2022

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
Dobutamine G98 2.61x60 TM2 Van der Waals
Dobutamine G98 2.61x60 TM2 polar (hydrogen bond with backbone)
Dobutamine L101 2.64x63 TM2 polar (hydrogen bond)
Dobutamine V102 2.65x64 TM2 polar (hydrogen bond)
Dobutamine W117 3.28x28 TM3 Van der Waals
Dobutamine W117 3.28x28 TM3 hydrophobic
Dobutamine T118 3.29x29 TM3 Van der Waals
Dobutamine D121 3.32x32 TM3 polar (charge-assisted hydrogen bond)
Dobutamine V122 3.33x33 TM3 polar (hydrogen bond)
Dobutamine V125 3.36x36 TM3 Van der Waals
Dobutamine V125 3.36x36 TM3 hydrophobic
Dobutamine F201 45.52x52 ECL2 polar (hydrogen bond)
Dobutamine S211 5.42x43 TM5 polar (hydrogen bond with backbone)
Dobutamine S211 5.42x43 TM5 polar (hydrogen bond)
Dobutamine S212 5.43x44 TM5 Van der Waals
Dobutamine S215 5.46x461 TM5 polar (hydrogen bond)
Dobutamine F306 6.51x51 TM6 aromatic (edge-to-face)
Dobutamine F306 6.51x51 TM6 Van der Waals
Dobutamine F307 6.52x52 TM6 polar (hydrogen bond)
Dobutamine N310 6.55x55 TM6 polar (hydrogen bond)
Dobutamine N310 6.55x55 TM6 polar (hydrogen bond)
Dobutamine V326 7.36x35 TM7 polar (hydrogen bond)
Dobutamine N329 7.39x38 TM7 polar (hydrogen bond)
Dobutamine W330 7.40x39 TM7 polar (hydrogen bond)
Dobutamine W330 7.40x39 TM7 polar (hydrogen bond)
Dobutamine Y333 7.43x42 TM7 polar (hydrogen bond)

Ligands

Dobutamine

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Residue Diagrams

V N G A V I L L V V L A M L L S M G A E 1 T S L A C A D L V M G L L V V P F G A T L 2 V C L T E I S A T V C L V D L S T W C E 3 A K V I I C T V W A I S A L V S F L P I 4 Y V F I M I L L P I Y F S I I S S A I A Y 5 G I I M G V F T L C W L P F F L V N I V 6 I P N F A S N A Y G L W N F F V F L W 7
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ICL1 Q R L Q ICL1ECL1 T W L W ECL1ICL2 P F R Y Q S L M ICL2ECL2 W W R D E D P Q A L K C Y Q D P G C C D F V T ECL2ICL3 G R F Y G S Q E Q P Q P P P L P Q H Q P I L G N G R A S K ICL3ECL3 R D L V ECL3N-term M G D G W L P P D C G P H N R S G G G G A T A A P T G S R Q V S N-termC-term F P R K A D R R L H A G G Q P A P L P G G F I S T L G S P E H S P G G T W S D C N G G T R G G S E S S L E E R H S K T S R S E S K M E R E K N I L A T T R F Y C T F L G N G D K A V F C T V L R I V K L F E D A T C T C P H T H K L K M K W R F K Q H Q A C-term A E L L S Q Q W E A G M S L L M A L V V L L I V A G N V L V I A A I G R T T L T N L F I T S L A C A D L V M G L L V V P F G A T L V V R G G S F L C E C W T S L D V L C V T A S I E T L C V I A I D R Y L A I T S T R A R A K V I I C T V W A I S A L V S F L P I M M H N R A Y A I A S S I I S F Y I P L L I M I F V Y L R V Y R E A K E Q I R K I D R C E R K T S R V M A M R E H K A L K T L G I I M G V F T L C W L P F F L V N I V N V F N P D W L F V F F N W L G Y A N S A F N P I I Y C R S P D F K R F R K A L L C
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Residue Table


GPCRdb(A)
GPCRdb(A)
β1-adrenoceptor
TM2
2x60 2.61x60 G98
2x63 2.64x63 L101
2x64 2.65x64 V102
TM3
3x28 3.28x28 W117
3x29 3.29x29 T118
3x32 3.32x32 D121
3x33 3.33x33 V122
3x36 3.36x36 V125
ECL2
45x52 45.52x52 F201
TM5
5x43 5.42x43 S211
5x44 5.43x44 S212
5x461 5.46x461 S215
TM6
6x51 6.51x51 F306
6x52 6.52x52 F307
6x55 6.55x55 N310
TM7
7x35 7.36x35 V326
7x38 7.39x38 N329
7x39 7.40x39 W330
7x42 7.43x42 Y333