Structure information

TP receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

6IIV

SPECIES

Homo sapiens

RESOLUTION

3.000

PREFERRED CHAIN

A

PUBLICATION DATE

Dec. 19, 2018

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
Daltroban T81 2.57x56 TM2 polar (hydrogen bond)
Daltroban V85 2.61x60 TM2 hydrophobic
Daltroban H89 2.65x64 TM2 polar (charge-assisted hydrogen bond)
Daltroban M112 3.32x32 TM3 hydrophobic
Daltroban S181 ECL2 polar (charge-assisted hydrogen bond)
Daltroban W182 ECL2 aromatic (face-to-edge)
Daltroban W258 6.48x48 TM6 aromatic (edge-to-face)
Daltroban L294 7.39x38 TM7 hydrophobic
Daltroban R295 7.40x39 TM7 polar (charge-charge)
Daltroban Q301 7.46x46 TM7 polar (hydrogen bond)

Ligands

Daltroban

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Residue Diagrams

L N S A L G V V C F S A A F W P S 1 C G L V L T D F L G L V L T G T I V V S Q 2 A A G L L L P S L G F F I M V V G M F R 3 A W A T V G L V W A A A L A L G L L P L 4 N L L F S L G V S L G G L M S F L L G F 5 L L G I M V V A V S C W L P L L V F I A Q 6 W P D L I Q N W T A V R L Y I L L E K 7
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ICL1 G G S H T R ICL1ECL1 L F E W H A V D P G ECL1ICL2 P F S R P A V A ICL2ECL2 V G R Y T V Q Y P G S W C F L T L G A ECL2ICL3 E A A Q ICL3ECL3 N P P A M S P A G Q L ECL3N-term M W P N G S S L G P C F R P T N I T L E E R R L I A N-termC-term L Q P Q L T Q R S G L Q C-term S P W F A A S F C V V G L A S N L L A L S V L A G A R Q S S F L T F L C G L V L T D F L G L L V T G T I V V S Q H A A C R L C R F M G V V M I F F G L S P L L L G A A M A S E R Y L G I T R S Q R R A W A T V G L V W A A A L A L G L L P L L G E S G D V A F G L L F S M L G G L S V G L S F L L N T V S V A T L C H V Y H G Q Q R P R D S E V E M M A Q L L G I M V V A S V C W L P L L V F I A Q T V L R S R T T E K E L L I Y L R V A T W N Q I L D P W V Y I L F R R A L Q P R P R V L R R R L S T S L S
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Residue Table


GPCRdb(A)
GPCRdb(A)
TP receptor
TM2
2x56 2.57x56 T81
2x60 2.61x60 V85
2x64 2.65x64 H89
TM3
3x32 3.32x32 M112
TM6
6x48 6.48x48 W258
TM7
7x38 7.39x38 L294
7x39 7.40x39 R295
7x46 7.46x46 Q301