Structure information

LPA1 receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

4Z35

SPECIES

Homo sapiens

RESOLUTION

2.900

PREFERRED CHAIN

A

PUBLICATION DATE

June 3, 2015

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
ONO-9910539 Y34 N-term polar (charge-assisted hydrogen bond)
ONO-9910539 K39 N-term polar (charge-charge)
ONO-9910539 T113 23.50x50 ECL1 polar (charge-assisted hydrogen bond)
ONO-9910539 Q125 3.29x29 TM3 polar (hydrogen bond)
ONO-9910539 Q125 3.29x29 TM3 polar (hydrogen bond)
ONO-9910539 I128 3.32x32 TM3 hydrophobic
ONO-9910539 M198 ECL2 hydrophobic
ONO-9910539 W210 5.43x43 TM5 polar (hydrogen bond)
ONO-9910539 W271 6.48x48 TM6 hydrophobic
ONO-9910539 L278 6.55x55 TM6 hydrophobic
ONO-9910539 E293 7.35x34 TM7 polar (charge-assisted hydrogen bond)
ONO-9910539 F296 7.38x37 TM7 hydrophobic
ONO-9910539 L297 7.39x38 TM7 hydrophobic

Ligands

ONO-9910539

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Residue Diagrams

L N A L M I F I C V T I G L G M V L K S 1 A N L A A A D F F A G L A Y F Y L M F N 2 A L L N A V S A T L S T D I L G Q R L L 3 V V V V I V V I W T M A I V M G A I P S 4 Y L V V M V V F T V L N F I A W F V L Y 5 V I V L G A F I I C W T P G L V L L L L 6 I P N M A S N F E A L L L F F K E Y A 7
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ICL1 R R F H ICL1ECL1 T G P N T R R L ECL1ICL2 M Q L H T R M ICL2ECL2 W N C I C D I E N C S N M A P L Y ECL2ICL3 R H S S ICL3ECL3 P Q C ECL3N-term M A A I S T S I P V I S Q P Q F T A M N E P Q C F Y N E S I A F F Y N R S G K H L A T E W N N-termC-term C Q R S E N P T G P T E G S D R S A S S L N H T I L A G V H S N D H S V V C-term T V S K L V M G L G I T V C I F I M L A N L L V M V A I Y V N F P I Y Y L M A N L A A A D F F A G L A Y F Y L M F N T V S T W L L R Q G L I D T S L T A S V A N L L A I A I E R H I T V F R S N R R V V V V I V V I W T M A I V M G A I P S V G S D S Y L V F W A I F N L V T F V V M V V L Y A H I F G Y V R Q R T M R M S G P R R N R D T M M S L L K T V V I V L G A F I I C W T P G L V L L L L D V C C D V L A Y E K F F L L L A E F N S A M N P I I Y S Y R D K E F R Q M S A T I L C
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Residue Table


GPCRdb(A)
GPCRdb(A)
LPA1 receptor
ECL1
23x50 23.50x50 T113
TM3
3x29 3.29x29 Q125
3x32 3.32x32 I128
TM5
5x43 5.43x43 W210
TM6
6x48 6.48x48 W271
6x55 6.55x55 L278
TM7
7x34 7.35x34 E293
7x37 7.38x37 F296
7x38 7.39x38 L297