Structure information

β1-adrenoceptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

2YCZ

SPECIES

Meleagris gallopavo

RESOLUTION

3.650

PREFERRED CHAIN

B

REFERENCE

10.1073/PNAS.1100185108

PUBLICATION DATE

June 1, 2011

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
Iodocyanopindolol D121 3.32x32 TM3 polar (charge-charge)
Iodocyanopindolol D121 3.32x32 TM3 polar (charge-assisted hydrogen bond)
Iodocyanopindolol V122 3.33x33 TM3 hydrophobic
Iodocyanopindolol F201 45.52x52 ECL2 hydrophobic
Iodocyanopindolol S211 5.42x43 TM5 polar (hydrogen bond)
Iodocyanopindolol S211 5.42x43 TM5 polar (hydrogen bond)
Iodocyanopindolol F306 6.51x51 TM6 hydrophobic
Iodocyanopindolol F307 6.52x52 TM6 aromatic (edge-to-face)
Iodocyanopindolol N329 7.39x38 TM7 polar (hydrogen bond)
Iodocyanopindolol N329 7.39x38 TM7 polar (charge-assisted hydrogen bond)

Ligands

Iodocyanopindolol

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Residue Diagrams

V N G A V I L L V V L A M L L S M G A E 1 T S L A C A D L V M G L L V V P F G A T L 2 V C L T E I S A T V C L V D L S T W C E 3 A K V I I C T V W A I S A L V S F L P I 4 Y V F I M I L L P I Y F S I I S S A I A Y 5 G I I M G V F T L C W L P F F L V N I V 6 I P N F A S N A Y G L W N F F V F L W 7
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ICL1 Q R L Q ICL1ECL1 T W L W ECL1ICL2 P F R Y Q S L M ICL2ECL2 W W R D E D P Q A L K C Y Q D P G C C D F V T ECL2ICL3 G R F Y G S Q E Q P Q P P P L P Q H Q P I L G N G R A S K ICL3ECL3 R D L V ECL3N-term M G D G W L P P D C G P H N R S G G G G A T A A P T G S R Q V S N-termC-term F P R K A D R R L H A G G Q P A P L P G G F I S T L G S P E H S P G G T W S D C N G G T R G G S E S S L E E R H S K T S R S E S K M E R E K N I L A T T R F Y C T F L G N G D K A V F C T V L R I V K L F E D A T C T C P H T H K L K M K W R F K Q H Q A C-term A E L L S Q Q W E A G M S L L M A L V V L L I V A G N V L V I A A I G R T T L T N L F I T S L A C A D L V M G L L V V P F G A T L V V R G G S F L C E C W T S L D V L C V T A S I E T L C V I A I D R Y L A I T S T R A R A K V I I C T V W A I S A L V S F L P I M M H N R A Y A I A S S I I S F Y I P L L I M I F V Y L R V Y R E A K E Q I R K I D R C E R K T S R V M A M R E H K A L K T L G I I M G V F T L C W L P F F L V N I V N V F N P D W L F V F F N W L G Y A N S A F N P I I Y C R S P D F K R F R K A L L C
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Residue Table


GPCRdb(A)
GPCRdb(A)
β1-adrenoceptor
TM3
3x32 3.32x32 D121
3x33 3.33x33 V122
ECL2
45x52 45.52x52 F201
TM5
5x43 5.42x43 S211
TM6
6x51 6.51x51 F306
6x52 6.52x52 F307
TM7
7x38 7.39x38 N329