Structure information

β1-adrenoceptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

2Y03

SPECIES

Meleagris gallopavo

RESOLUTION

2.850

PREFERRED CHAIN

B

PUBLICATION DATE

Jan. 12, 2011

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
Isoprenaline D121 3.32x32 TM3 polar (charge-assisted hydrogen bond)
Isoprenaline D121 3.32x32 TM3 polar (charge-charge)
Isoprenaline V122 3.33x33 TM3 hydrophobic
Isoprenaline F201 45.52x52 ECL2 hydrophobic
Isoprenaline S211 5.42x43 TM5 polar (hydrogen bond)
Isoprenaline S211 5.42x43 TM5 polar (hydrogen bond)
Isoprenaline S215 5.46x461 TM5 polar (hydrogen bond)
Isoprenaline F306 6.51x51 TM6 aromatic (edge-to-face)
Isoprenaline F307 6.52x52 TM6 aromatic (edge-to-face)
Isoprenaline N329 7.39x38 TM7 polar (charge-assisted hydrogen bond)
Isoprenaline N329 7.39x38 TM7 polar (hydrogen bond)

Ligands

Isoprenaline

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Residue Diagrams

V N G A V I L L V V L A M L L S M G A E 1 T S L A C A D L V M G L L V V P F G A T L 2 V C L T E I S A T V C L V D L S T W C E 3 A K V I I C T V W A I S A L V S F L P I 4 Y V F I M I L L P I Y F S I I S S A I A Y 5 G I I M G V F T L C W L P F F L V N I V 6 I P N F A S N A Y G L W N F F V F L W 7
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ICL1 Q R L Q ICL1ECL1 T W L W ECL1ICL2 P F R Y Q S L M ICL2ECL2 W W R D E D P Q A L K C Y Q D P G C C D F V T ECL2ICL3 G R F Y G S Q E Q P Q P P P L P Q H Q P I L G N G R A S K ICL3ECL3 R D L V ECL3N-term M G D G W L P P D C G P H N R S G G G G A T A A P T G S R Q V S N-termC-term F P R K A D R R L H A G G Q P A P L P G G F I S T L G S P E H S P G G T W S D C N G G T R G G S E S S L E E R H S K T S R S E S K M E R E K N I L A T T R F Y C T F L G N G D K A V F C T V L R I V K L F E D A T C T C P H T H K L K M K W R F K Q H Q A C-term A E L L S Q Q W E A G M S L L M A L V V L L I V A G N V L V I A A I G R T T L T N L F I T S L A C A D L V M G L L V V P F G A T L V V R G G S F L C E C W T S L D V L C V T A S I E T L C V I A I D R Y L A I T S T R A R A K V I I C T V W A I S A L V S F L P I M M H N R A Y A I A S S I I S F Y I P L L I M I F V Y L R V Y R E A K E Q I R K I D R C E R K T S R V M A M R E H K A L K T L G I I M G V F T L C W L P F F L V N I V N V F N P D W L F V F F N W L G Y A N S A F N P I I Y C R S P D F K R F R K A L L C
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Residue Table


GPCRdb(A)
GPCRdb(A)
β1-adrenoceptor
TM3
3x32 3.32x32 D121
3x33 3.33x33 V122
ECL2
45x52 45.52x52 F201
TM5
5x43 5.42x43 S211
5x461 5.46x461 S215
TM6
6x51 6.51x51 F306
6x52 6.52x52 F307
TM7
7x38 7.39x38 N329